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Cytogenetics

By DR. MD. NIAMAT ALI DR ALI   |   Kashmir University
Learners enrolled: 396

The course “Cytoenetics” is a core course in B.Sc. Medical sciences and M. Sc Zoology, M. Sc Botany and M. Sc Bioresources  under the Choice Based Credit System (CBSE). The course is specially designed to supplement and enhance the understanding of students about different dimensions of Cytogenetics    

Summary
Course Status : Upcoming
Course Type : Core
Language for course content : English
Duration : 12 weeks
Category :
  • Microbiology
Credit Points : 4
Level : Undergraduate/Postgraduate
Start Date : 07 Jul 2025
End Date : 31 Oct 2025
Enrollment Ends : 31 Aug 2025
Exam Date :
NCrF Level   : 4.5

Page Visits



Course layout

WEEK 1


1. Historical perspective of cells, cell theory and exceptions to cell theory


2. A detail classification of cell types within an organism; cell, tissue, organ and organisms as different levels of organization.


3. Overview of prokaryotic and eukaryotic (plants and aimals) cells


4. Structure of viruses - general structure,    properties of viral envelopes and enzymes (principles of virus taxonomy)


 

WEEK 2


5. Overview of phages, virioids, mycoplasma and Escherichia coli


6. Structure, properties and functions of the immune cells & organs -  hematopoeisis, T and B lymphocyte, NK cells, monocyte and macrophages


7. Structure, properties and functions of the immune cells & organs -  neutrophils, eosinophils, basophils, mast cells and dendritic cells


8. Structure, properties and functions of the immune cells & organs - thymus and bone marrow; lymph nodes, spleen, MALT, GALT and SALT


 


WEEK 3

9. Mitosis and meiosis: interrelation between the cell structure and the genetic function, mitosis, meiosis.


10. Linkage, crossing over and chromosomal mapping


11. Cytological basis and molecular mechanism of crossing over (recombination frequency as a measure of linkage intensity, two factor and three factor crosses, interferance and coincidence, somatic cell genetics – an alternative approach to gene mapping)


12. Chromosomal mechanisms and environmental factors determining sex (Barr bodies, dosage compensation)


 

WEEK 4

13. Gametogenesis and fertilization: structure and production of gametes, zygote formation


14. Functional organization of the cell nucleus: chromatin movements, nuclear bodies and its significance.


15. Chromosomal mutations: deletion, duplication, inversion, translocation, aneuploidy and polyploidy; gene mutations: induced versus spontaneous mutations, back versus suppressor mutations, molecular basis of mutatons in relation to UV light and chemical mutagens. Detection of mutations: CLB method, Attached X method


16. Microscopy and its types: principles of light microscopy, phase contrast, confocal microscopy. Electron microscopy (EM) - scanning EM and scanning transmission EM (STEM), fluorescence microscopy



WEEK 5

17. Biochemical techniques Part I and Part II


18. Sub-cellular fractionation (differential and density gradient centrifugation)


19. Cell fixation and staining: freeze-drying and free-substitution, microtomes  and embedding, chemical basis of staining, metachromasia


20. Human karyotype


WEEK 6

21. Human cytogenetics technique: Fluorescence In Situ Hybridization (FISH)


22. Advanced Techniques in Chromatography and Their Applications 


23. General characteristics of cell differentiation


24. Molecular mechanism of cell differentiation


WEEK 7

25. Chemical composition and properties of membrane components


26. Selective permeability of the membranes, membrane transport


27. Cell wall, extracellular matrix 


28. Plasma membrane and membrane transport


WEEK 8

29. Phagocytosis, pinocytosis and exocytosis.


30. Nuclear structure and functions


31. Nuclear lamina, transport across nuclear envelope, Chromatin: molecular organization


32. Nucleolus and rRNA processing.



WEEK 9

33. Genome sequence and chromosome diversity, chromosome duplication and segregation, And nucleosome.


34. Chromatin structure


35. Regulation of chromatin structure and nucleosome assembly, organisation of chromosomes


36.Human chromosomal abnormalities: aneuploidy, reciprocal translocations, sex chromosomal abnormalities and autosomal abnormalities (mongolism)



WEEK 10

37. Cell Biology


38. Endoplasmic reticulum, Golgi apparatus, Mechanism of vesicular transport  and lysosomes


39. Mitochondria and chloroplast DNA 


40. Extra-chromosonal inheritance



WEEK 11

41. Mitochondrial mutations, Maternal effects and  ineffective heredity


42. Cytoskelton and Cell movement


43. Intermediate filaments, microtubules 


44. Signaling molecules and their receptor; functions of cell surface receptors



WEEK 12

45. Cell cycle


46. Carcinogenesis Characteristics of cancerous cells Process of Carcinogenesis


47. Common chromosome abnormalities in cancer



Books and references

1. Cell and Molecular biology by Gerald Karp.
2. Principles of Biochemistry by David L. Nelson and Michael M. Cox.
3. Molecular Biology by Robert F. Weaver.
4. Molecular Cell Biology by Lodish, Berk, Matsudaira, Kaiser, Kreiger, Scott, Zipursky and Darnell.
5. Kingdoms and Domains: An Illustrated Guide to the Phyla of Life on
Earth by Margulis, L. & Chapman, M.J. 4th edition Amsterdam:
Academic Press/Elsevier. ISBN-13: 978-0123736215
6. Cell and Molecular Biology by De Robertis and De Robertis. 8th edition;
Lippincott Williams and Wilkins;ISBN-13: 978-0781734936
7. Fundamentals of Ecology by Eugene P. Odum and Gray W. Barrett. 5
edition; Cengage; ISBN-13: 978-8131500200
8. Biological Science by D.J. Taylor, N.P.O. Green, G.W. Stout. 3rd
edition; Cambridge university press. ISBN-13: 978-0521684170
9. Models of the Ecological Hierarchy: From Molecules to the Ecosphere
by Jordan, F; Jørgensen, S. E. 1st Edition Elsevier;
ISBN 9780444593962.
10. Life sciences Fundamentals and Practices-II by Pranab Kumar and
Usha Mina; Pathfinder Publication;5th edition.
ISBN: 978-81-906427-7-4.
11. Openstax college, Anotomy& physiology. 25 April 2013 ISBN-13: 978-1-
938168-13-0.
12. Solomon, Eldra P.; Berg, Linda R.; Martin, Diana W. (2002), Biology
(6th ed.), Brooks/Cole, ISBN 0-534-39175-3

Instructor bio

Dr. Md. Niamat Ali, Associate Professor (Zoolgy: Cytogenetics and Molecular Biology), Centre for Research and Development, University of Kashmir, Srinagar-190 006, J & K, India

 

Email ID: mdniamat@hotmail.com   mdniamat@gmail.com  mdniamat@uok.edu.in

 

Dr. Md. Niamat Ali did his M.Sc from University of Burdwan, West  Bengal, India; M.Phil and Ph.D from Aligarh Muslim University, Aligarh-202002, U. P., India.

ACADEMIC HIGHLIGHTS AT A GLANCE

Teaching Experience:  20 years (A.  M. U, Aligarh- 06 years and Kashmir University, Srinagar - 14 years)

Research Experience: 25 years

Major Field of Research and Teaching Interest: Cytogenetics, Molecular Biology and Immunogenetics; Toxicogenomics; Human Genomics and Proteomics; Stem Cell Biology and Regenerative Medicine; Radiation Biology and Gene Therapy; Cell and Tissue Culture Technology and Ageing Biology; PCR and DNA Fingerprinting Technology, FISH Technology and Comet Assay; Biostatistics

 

Invited Talks Delivered as a Resource Person: 10

Research Papers Presented/ Participated in Seminar/ Symposium (Oral/ Poster): 10

Review Articles Contributed for the Guide Books Edited for the Participants of Workshops: 10

Reviewer of Academic Video Documents, E-module Content for Biomedical Science, Assigned by Educational Multimedia Research Centre, University of Kashmir, Srinagar, J & K, India: 35

Workshop/Conferences/Seminar Organized: 01

Executive Editor of Journal/ Editor Souvenir and Abstract Book for Seminar and Conference/ Workshop Guide Books: 11

Number of M. Phil produced: 07

Number of Ph. D awarded/ submitted: 03

Number of Ph. D Scholars presently working under supervision: 08

Research Papers Published in National and International Journals of Repute: 46 [Chromosoma (Springer Verlag: IF = 4.196); Journal of Ethnopharmacology (Elsevier : IF = 3. 728); Chemosphere (Elsevier: IF = 3.613); Mutation Research/Genetic Toxicology and Environmental Mutagenesis (Elsevier: IF = 3.175); Ecotoxicology and Environmental Safety (Academic Press: IF = 2.718); Microbial Pathogenesis (Elsevier: IF: 1.888 ); Indian Journal of Experimental Biology (NISCAIR, CSIR, New DelhiI: IF = 1.295); Toxicological and Environmental Chemistry (Taylor and Francis: IF = 1. 020); Mitteilungen der Schweizerischen Entomologischen Gesellschaft. Bulletin de la Societe Entomologique Suisse (Schaffhausen puis Lausanne puis Zürich: IF = 0. 764; Saudi Journal of Biological Sciences (Elsevier: IF = 0.741); Journal of Scientific and Industrial Res (NISCOM, CSIR,  New Delhi: IF = 0.5); Journal of Clinical Toxicology (OMICS International, Online Journal, USA, etc]    

Course certificate

Internal Assessment - Weekly assessments released in the course shall be considered for Internal Marks and will carry 30 percent for the Overall Result. Out of all weekly assignments, the best/top five scores will be considered for the final Internal Assessment marks.
End-term Assessment - The final exam shall be conducted by NTA, and will carry 70 percent for the overall Result.
All students who obtain 40% marks in the internal assessment and 40% marks in the end-term proctored exam separately will be eligible for the SWAYAM Credit Certificate.


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