This course will focus on the use of efficient technologies used in the protein modeling and its analysis on the basis of the available amino acid or gene sequences.
During this course, candidates learned the introduction to the basic biology required for computational structural designing along with Modeling software. The course includes hands-on exercises on sequence searching (genes & Proteins) and the protein structure design and its analysis approach.
| Course Status : | Upcoming |
| Course Type : | Not Applicable |
| Language for course content : | English |
| Duration : | 12 weeks |
| Category : |
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| Credit Points : | 4 |
| Level : | Diploma |
| Start Date : | 15 Jul 2025 |
| End Date : | 15 Nov 2025 |
| Enrollment Ends : | 15 Sep 2025 |
| Exam Date : | 14 Dec 2025 IST |
| Exam Shift: : | Shift-II |
Note: This exam date is subject to change based on seat availability. You can check final exam date on your hall ticket.
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Week |
Topics
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Video Title |
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Week-1 |
Cell Biology |
Basic Biology-I |
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Microbiology |
Basic Biology-II |
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Virology |
Basic Biology-III |
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Week-2 |
Molecular Biology |
Basic Biology-IV |
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Chromosomes and Genes |
Basic Biology-V |
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Amino acids and Protein Synthesis |
Basic Biology-VI |
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Week-3 |
History and development of computers, Computer Coding, Number system |
Basics of Computer-I |
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Languages and flow charts and Operating Systems |
Basics of Computer-II |
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Modern Computers, Supercomputers, Internet and related programs, Introduction to Biostatistics |
Basics of Computer-III |
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Week-4 |
Basics about Protein |
Introduction to Protein |
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Detail about primary structure of Protein |
Primary structures of Protein |
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Secondary Structure with method of identification |
Secondary Structure with method of identification |
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Detail about Tertiary Structure |
Tertiary Structure |
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Detail about Quaternary Structure |
Quaternary Structure |
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Week-5 |
Introduction to Bioinformatics, Origin and History of Bioinformatics, |
Introduction to Bioinformatics
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Introduction to alignment and Types of Alignments Global and. Local alignment |
Sequence Alignment |
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Pair wise Alignment, Multiple Sequence Alignment |
Types of alignment-I |
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Clustal W Tool |
Types of alignment-II |
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Week-6 |
Basic Local Alignment Search Tool with demo |
BLAST-I |
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Alignment Search Tool with demo |
BLAST-II |
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Structural determination and Types of Molecular Modeling |
Structure Determination and Molecular Modeling |
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Week-7 |
Different Types of Search Tools |
Database Search |
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Details About NCBI |
Database Search NCBI-I |
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NCBI searching |
Database Search NCBI-II |
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Week-8 |
Introduction and detail about RCSB |
Database Search RCSB-I |
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Searching in RCSB |
Database Search RCSB-II |
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Week-9 |
Details about Modeler and protein modeling through Modeler |
Modeling Software-I |
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Details about different Modeler and protein modeling through other Modeler |
Modeling Software-II |
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Week-10 |
Introduction and features of SWISS-Model |
Modeling Server SWISS-Model |
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Introduction and features of The Pipeline |
Modeling Server The Pipeline |
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Introduction and features of The Workspace |
Modeling Server The Workspace |
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Week-11 |
Introduction and features of Modeling Server The Repository |
Modeling Server The Repository |
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Introduction and features of Modeling Server 3D-JIGSAW |
Modeling Server 3D-JIGSAW |
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Introduction and features of Modeling Server Geno3D |
Modeling Server Geno3D |
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Week-12 |
Details about Rasmol with Demo |
Protein Structure Visualization Tool-I |
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Details about Swiss-PDB Viewer with Demo |
Protein Structure Visualization Tool-II |
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About Procheck tool |
Structure Validation-1 |
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About WHAT IF server |
Structure Validation-2 |
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About PROSA |
Structure Validation-3 |
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Computer, Biology and Modeller |
Conclusion and Revision |
1. Bioinformatics: sequence and genome analysis, 2nd edition Paperback – 1 January 2004
by Mount David W. (Author)
2. Bioinformatics: Sequence and Genome Analysis Paperback – Illustrated, 16 August 2004
3. Introduction to Bioinformatics, T K Atwood, DJ Perry SmithSphukan, Pearson 2009.
5. Introduction to Bioinformatics (Cell and Molecular Biology in Action) Paperback – 8 March 1999 by Dr Teresa Attwood (Author), Dr David Parry-Smith (Author)
6. Introduction to computers, by N. Subramanian, March 2001.
Prof. M. K. Verma
Chhattisgarh Swami Vivekanand Technical University, Bhilai
Dr. M. K. Verma is currently working as Vice Chancellor in Chhattisgarh Swami Vivekanand Technical University Bhilai (CG). He has vast exposure and experience of 33 years in Research & Academics, Administration and Management. In the field of research and academic, he has published more than 200 research publications in standard journals/conferences have been culminated with a number of recognition and awards. He discharges his duty in NIT Raipur as Dean R & D, Dean Academic Affairs and Dean Student Welfare. He had been Serving Society by providing informal education/training by establishing an independent & self-financed Continuing Education Cell (CEC) and trained more than 2800 persons through 140 one month duration programs. Research guidance and training are also provided in a new upcoming area of Bioinformatics. He has established the Sub-DIC Bioinformatics Center in NIT Raipur funded by DBT, Govt. of India. serving the State and Central Govt. on versatile fronts on various capacity such as Coordinator State Technical Agency (STA) for Chhattisgarh state for NATIONAL RURAL DRINKING WATER PROJECTS (NRDWP), Ministry of Rural Development Government of India, Gazetted member of State Level Expert Appraisal Committee Ministry of Environment & Forest Govt. of India, Coordinator for ‘Chhattisgarh Council of Sc. & Technology’ etc.
Dr Ashish Patel
Chhattisgarh Swami Vivekanand Technical University, Bhilai
Dr Ashish Patel is PhD in Bioinformatics and currently working as Guest Faculty of Bioinformatics and Sr. Consultant in CSVTU Bhilai (CG). He has published more than 150 research papers in the different reputed Journals and International & national conferences. He has completed 3 research projects funded by different state and National Agencies and published 3 books in the domain of Bioinformatics and machine learning. Dr Patel took a copyright for his work of database development in the area of Bioinformatics. He has received many awards in the research and academics. He has received “Young Scientist”award in VIFRA-2015 by center for advance research and design, Tamil Nadu,Venus international Foundation.
Exam Registration URL: Announcements will be made when the registration form is open for registrations.
The online registration form has to be filled, and the certification exam fee needs to be paid.
CRITERIA TO GET A CERTIFICATE
30 Marks will be allocated for Internal Assessment (Final Quiz- Mandatory) which will be available at the end of the course and 70 Marks will be allocated for end term proctored examination.
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